https://cparsania.r-universe.devRecent package updates in cparsaniaR-universehttps://github.com/cparsania.pnghttps://cparsania.r-universe.devTue, 13 Oct 2026 04:12:14 GMTchirag.parsania@gmail.com (Chirag Parsania)Multithreaded sequential BAM processing built on top of the ompBAM C++ engine. BamScaleR provides user-friendly BAM read and scan interfaces designed for compatibility with existing Bioconductor workflows.https://github.com/r-universe/biocstaging/actions/runs/38394046489Tue, 13 Oct 2026 04:12:14 GMTBamScaleR0.99.2successhttps://biocstaging.r-universe.devhttps://github.com/BiocStaging/BamScaleRbenchmark-results.Rmdbenchmark-results.htmlBenchmarking BamScaleR: reader throughput and end-to-end workflow impact2026-04-20 06:18:302026-10-13 04:12:14BamScaleR-intro.RmdBamScaleR-intro.htmlGetting started with BamScaleR2026-10-06 05:09:212026-10-06 05:09:21chirag.parsania@gmail.com (Chirag Parsania)Multithreaded sequential BAM processing built on top of the ompBAM C++ engine. BamScale provides user-friendly BAM read and scan interfaces designed for compatibility with existing Bioconductor workflows.https://github.com/r-universe/bioc/actions/runs/38724011844Thu, 13 Aug 2026 04:50:17 GMTBamScale0.99.14successhttps://bioc.r-universe.devhttps://github.com/bioc/BamScalebenchmark-results.Rmdbenchmark-results.htmlBenchmarking BamScale: reader throughput and end-to-end workflow impact2026-04-20 06:18:302026-08-12 04:52:09BamScale-intro.RmdBamScale-intro.htmlGetting started with BamScale2026-04-20 06:18:302026-05-04 05:29:45chirag.parsania@gmail.com (Chirag Parsania)The VISTA (Visualization and Integrated System for Transcriptomic Analysis) platform streamlines differential expression workflows by wrapping DESeq2 and edgeR into a SummarizedExperiment-based container with consistent metadata. The package includes visualization utilities, MSigDB enrichment helpers, and optional deconvolution support to simplify interactive exploration of RNA-seq experiments.https://github.com/r-universe/bioc/actions/runs/37289760146Thu, 06 Aug 2026 02:47:08 GMTVISTA1.1.5successhttps://bioc.r-universe.devhttps://github.com/bioc/VISTAVISTA-airway.RmdVISTA-airway.htmlComplete RNA-seq Analysis Workflow with VISTA2026-02-17 02:51:382026-08-05 06:50:55chirag.parsania@gmail.com (Chirag Parsania)High-performance interval overlap and join operations for 'IRanges' and 'GenomicRanges'. The package provides deterministic multithreaded overlap computation, reusable subject indexes for repeated queries, and join helpers that keep range metadata in a consistent output grammar.https://github.com/r-universe/bioc/actions/runs/37192225117Tue, 28 Apr 2026 13:06:59 GMTfastRanges1.1.0successhttps://bioc.r-universe.devhttps://github.com/bioc/fastRangesfastRanges.RmdfastRanges.htmlfastRanges: A Practical Introduction to Genomic Interval Analysis2026-03-11 01:16:272026-03-27 05:02:04